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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CSGALNACT1, chondroitin sulfate N-acetylgalactosaminyltransferase 1
Sequence ID:NM_001130518
NM_018371
NR_024040
Entrez Gene ID:55790
Ensembl ID:ENSG00000147408

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 19263167 - 19363369

 Exon Info From UCSC:
NM_001130518
NM_018371

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30340553Full LengthBC060772chondroitin sulfate N-acetylgalactosaminyltransferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060841  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001130518 NP_001123990 Q8TDX6 EC 2.4.1.174  
NM_018371 NP_060841 Q8TDX6 EC 2.4.1.174 CHGN

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC060772 AAH60772 Q8TDX6 EC 2.4.1.174
AY358441 AAQ88806 Q8TDX6 EC 2.4.1.174
AK002126 BAA92093 Q8TDX6 EC 2.4.1.174
AB071403 BAB85992 Q8TDX6 EC 2.4.1.174
AB081516 BAC16217 Q8TDX6 EC 2.4.1.174
AK314625 BAG37191 Q8TDX6 EC 2.4.1.174
AK055154 BAG51476 B3KNW4  
AL157483 CAB75673 Q8TDX6 EC 2.4.1.174

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSGALNACT1 NP_001123990 M.musculus Csgalnact1 234356 Gene Info NP_766341 93
R.norvegicus Csgalnact1 306375   NP_001100779 91
A.gambiae AgaP_AGAP007720 1269523   XP_564504 44
D.melanogaster CG12913 36079   NP_610567 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)