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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PRKCSH, Protein kinase C substrate 80K-H
Sequence ID:NM_002743
NM_001001329
RefSeqGene ID:NG_009300
Entrez Gene ID:5589
Ensembl ID:ENSG00000130175

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
POLYCYSTIC LIVER DISEASESEC63

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 11546938 - 11560227

 Exon Info From UCSC:
NM_002743
NM_001001329

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3883364IncompleteBC015154protein kinase C substrate 80K-H
3892103IncompleteBC013586protein kinase C substrate 80K-H
40117304IncompleteBC128412protein kinase C substrate 80K-H

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002734  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001329 NP_001001329    
NM_002743 NP_002734 P14314 efhand
PRKCSH

Related Sequences

 
mRNAGenPeptSwissProt
J03075 AAA52493 P14314
AF144075 AAF66686 P14314
BC013586 AAH13586 P14314
BC015154 AAH15154 P14314
BC128412 AAI28413 A2VCQ4
BT009858 AAP88860 P14314
AK290433 BAF83122 P14314
AK296187 BAG58917 B4DJQ5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRKCSH NP_001001329 R.norvegicus Prkcsh 300445   NP_001100276 88
M.musculus Prkcsh 19089 Gene Info NP_032951 86
D.melanogaster CG6453 35056   NP_609844 42
A.gambiae AgaP_AGAP004609 1275924   XP_315213 41
C.elegans ZK1307.8 174515   NP_496073 38
A.thaliana PSL4 835736   NP_568840 35
S.pombe SPCC825.02 2538725   NP_588052 35
N.crassa NCU05606 3876683   XP_960568 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)