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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SETD4, SET domain containing 4
Sequence ID:NM_017438
NM_001007259
Entrez Gene ID:54093
Ensembl ID:ENSG00000185917

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 37415983 - 37451687

 Exon Info From UCSC:
NM_017438
NM_001007259

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3940849Full LengthBC002898SET domain containing 4
5266627Full LengthBC036556SET domain containing 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007260  NP_059134  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001007259 NP_001007260   SET
NM_017438 NP_059134 Q9NVD3 SET

Related Sequences

 
mRNAGenPeptSwissProt
BC002898 AAH02898 Q9NVD3
BC036556 AAH36556 Q9NVD3
AF391112 AAL34503 Q9NVD3
EU446809 ABZ92338  
AK001660 BAA91819 Q9NVD3
AK300009 BAG61826 Q9NVD3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SETD4 NP_059134 M.musculus Setd4 224440 Gene Info NP_663457 77
R.norvegicus Setd4 245975   NP_001107219 77
C.elegans set-29 171705   NP_490849 32
D.melanogaster CG33230 2768998   NP_995955 30
S.pombe set11 2539232   NP_588349 29