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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TCF4, transcription factor 4
Sequence ID:NM_001083962
NM_001243226
NM_001243227
NM_001243228
NM_001243230
NM_001243231
NM_001243232
NM_001243233
NM_001243234
NM_001243235
NM_001243236
NM_003199
RefSeqGene ID:NG_011716
Entrez Gene ID:6925
Ensembl ID:ENSG00000196628

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
PITT-HOPKINS SYNDROME 

Cytogenetic Location (from UniGene)

Cytogenetic Location:18q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 52895079 - 53068899

 Exon Info From UCSC:
NM_001083962
NM_003199

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40117795Full LengthBC125084transcription factor 4
40117798Full LengthBC125085transcription factor 4
5273193IncompleteBC031056transcription factor 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003190  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001083962 NP_001077431    
NM_001243226 NP_001230155    
NM_001243227 NP_001230156    
NM_001243228 NP_001230157    
NM_001243230 NP_001230159    
NM_001243231 NP_001230160    
NM_001243232 NP_001230161    
NM_001243233 NP_001230162    
NM_001243234 NP_001230163    
NM_001243235 NP_001230164    
NM_001243236 NP_001230165    
NM_003199 NP_003190 P15884 HLH

Related Sequences

 
mRNAGenPeptSwissProt
M74718 AAA60310 P15884
M74719 AAA60311 P15884
BC125084 AAI25085 P15884
BC125085 AAI25086 P15884
AB209741 BAD92978 Q59ES0
AK095041 BAG52974 B3KT62
AK096862 BAG53382 B3KUC0
AK122765 BAG53716 B3KVA4
AK300038 BAG61849 P15884
AK300636 BAG62325 B4DUG3
AK299169 BAH12962 B7Z5M6
AK300612 BAH13314 B4DUG3
AK301144 BAH13417 B7Z6Y1
AK316165 BAH14536 B4DUG3
X52079 CAA36298 P15884
FR748205 CBY80184 G0LNT4
FR748206 CBY80185 G0LNT5
FR748207 CBY80186 G0LNT6
FR748208 CBY80187 G0LNT7
FR748209 CBY80188 G0LNT8
FR748210 CBY80189 P15884
FR748211 CBY80190 P15884
FR748212 CBY80191 P15884
FR748213 CBY80192 P15884
FR748214 CBY80193 B7Z6Y1
FR748215 CBY80194 G0LNU4
FR748216 CBY80195 G0LNU5
FR748217 CBY80196 B3KUC0
FR748218 CBY80197 B4DUG3
FR748219 CBY80198 P15884
FR748220 CBY80199 P15884
FR748221 CBY80200 P15884
FR748222 CBY80201 P15884
FR748223 CBY80202 G0LNV2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TCF4 NP_001077431 M.musculus Tcf4 21413 Gene Info NP_038713 98
R.norvegicus Tcf4 84382   NP_445821 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)