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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CAB39, calcium binding protein 39
Sequence ID:NM_001130849
NM_001130850
NM_016289
Entrez Gene ID:51719
Ensembl ID:ENSG00000135932

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q37.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 231675018 - 231685787

 Exon Info From UCSC:
NM_001130849
NM_001130850
NM_016289

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4397573Full LengthBC020570calcium binding protein 39

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057373  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130849 NP_001124321    
NM_001130850 NP_001124322    
NM_016289 NP_057373 Q9Y376 Mo25

Related Sequences

 
mRNAGenPeptSwissProt
AF151824 AAD34061 Q9Y376
AF113536 AAF14873 Q9Y376
BC020570 AAH20570 Q9Y376
AF134480 AAP97257 Q7Z4X0
AK292382 BAF85071 A8K8L7
AK315692 BAG38055 A8K8L7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAB39 NP_001124321 M.musculus Cab39 12283 Gene Info NP_598542 99
A.gambiae AgaP_AGAP000812 1272400   XP_311350 73
A.gambiae AgaP_AGAP011060 1269445   XP_308076 73
D.melanogaster Mo25 39858   NP_524117 72
C.elegans mop-25.1 180685   NP_001024819 65
C.elegans mop-25.2 174527   NP_496092 61
S.pombe pmo25 2542388   NP_594685 52
A.thaliana AT4G17270 827441   NP_193460 45
A.thaliana AT5G47540 834804   NP_199565 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)