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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LSM10, LSM10, U7 small nuclear RNA associated
Sequence ID:NM_032881
Entrez Gene ID:84967
Ensembl ID:ENSG00000181817

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 36859025 - 36863486

NM_032881 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
207433685903036859753
7448693686336736863492

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3357043Full LengthBC007623LSM10, U7 small nuclear RNA associated

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116270  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032881 NP_116270 Q969L4 LSM

Related Sequences

 
mRNAGenPeptSwissProt
BC007623 AAH07623 Q969L4
AF394685 AAL07689 Q969L4
AF166092 AAQ13594 Q7Z2T2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LSM10 NP_116270 R.norvegicus Lsm10 366468   NP_001102446 92
M.musculus Lsm10 116748 Gene Info NP_620046 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)