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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EXOSC3, exosome component 3
Sequence ID:NM_001002269
NM_016042
RefSeqGene ID:NG_032780
Entrez Gene ID:51010
Ensembl ID:ENSG00000107371

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9p11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 37780452 - 37785014

 Exon Info From UCSC:
NM_001002269
NM_016042

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3346075Full LengthBC002437exosome component 3
4300826Full LengthBC008880exosome component 3

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001002269 NP_001002269    
NM_016042 NP_057126 Q9NQT5  

Related Sequences

 
mRNAGenPeptSwissProt
AF151860 AAD34097 Q9NQT5
AF229833 AAF42918 Q9NYS3
AF281132 AAF82133 Q9NQT5
BC002437 AAH02437 Q9NQT5
BC008880 AAH08880 Q9NQT5
DQ891938 ABM82864  
DQ895125 ABM86051  
AK289571 BAF82260 Q9NQT5
AK290864 BAF83553 Q9NQT5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EXOSC3 NP_057126 M.musculus Exosc3 66362 Gene Info NP_079789 88
R.norvegicus Exosc3 313243   NP_001101406 87
A.gambiae AgaP_AGAP010247 1279671   XP_319438 46
D.melanogaster Rrp40 319033   NP_722725 45
C.elegans exos-3 186604   NP_492751 40
A.thaliana AT2G25355 817074   NP_565592 40
A.thaliana AT4G32175 829350   NP_680755 38
N.crassa NCU00693 3881895   XP_965833 37
S.cerevisiae RRP40 854023   NP_014499 37
S.pombe SPAC22A12.12c 2541837   NP_593242 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)