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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RDH5, retinol dehydrogenase 5 (11-cis/9-cis)
Sequence ID:NM_001199771
NM_002905
RefSeqGene ID:NG_008606
Entrez Gene ID:5959
Ensembl ID:ENSG00000135437

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
RETINITIS PUNCTATA ALBESCENSPRPH2
RHO
RLBP1

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13-q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 56114196 - 56118489

Transcript StartTranscript EndChromosomal Start Chromosomal End
11515611415056114300
1524935611493656115277
4947525611547256115730
7539165611766956117832
91713365611810556118524

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4942311Full LengthBC028298retinol dehydrogenase 5 (11-cis/9-cis)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002896  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001199771 NP_001186700      
NM_001487 NP_001478 P78537   GCN5L1
NM_002905 NP_002896 Q92781 EC 1.1.1.315 adh_short

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
S82447 AAB37682 P78537  
U89717 AAB93668 Q92781 EC 1.1.1.315
U43559 AAC50725 Q92781 EC 1.1.1.315
BC028298 AAH28298 Q92781 EC 1.1.1.315
BC130640 AAI30641 P78537  
BC132795 AAI32796 P78537  
HQ447382 ADQ31868    
D64007 BAA10887 P78537  
AK293313 BAG56833 B4DDS2  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RDH5 NP_001186700 R.norvegicus Rdh5 366791   XP_345771 87
M.musculus Rdh5 19682 Gene Info NP_598767 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)