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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VPS29, Vacuolar protein sorting 29 homolog (S. cerevisiae)
Sequence ID:NM_057180
NM_016226
Entrez Gene ID:51699
Ensembl ID:ENSG00000111237

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 110929806 - 110933839

 Exon Info From UCSC:
NM_057180
NM_016226

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3461977Full LengthBC000880vacuolar protein sorting 29 homolog (S. cerevisiae)
5197243Full LengthBC032462vacuolar protein sorting 29 homolog (S. cerevisiae)
30719438Full LengthBC095446vacuolar protein sorting 29 homolog (S. cerevisiae)
4612923IncompleteBC017964vacuolar protein sorting 29 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057310  NP_476528  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_016226 NP_057310 Q9UBQ0 EC 3.1.3.3 Metallophos
NM_057180 NP_476528     Metallophos

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF193795 AAF04596 Q9UBQ0 EC 3.1.3.3
AF201946 AAF17238 Q9UBQ0 EC 3.1.3.3
AF201936 AAF86872 Q9UBQ0 EC 3.1.3.3
AF168716 AAF87318 Q9UBQ0 EC 3.1.3.3
AF175264 AAF89952 Q9UBQ0 EC 3.1.3.3
BC000880 AAH00880 Q9UBQ0 EC 3.1.3.3
BC015095 AAH15095 Q05DG7  
BC032462 AAH32462 Q8N0S8  
BC095446 AAH95446 Q9UBQ0 EC 3.1.3.3
AB618733 BAJ83889 E9RKB4  
AL136614 CAB66549 Q9UBQ0 EC 3.1.3.3
CR457182 CAG33463 Q9UBQ0 EC 3.1.3.3
CR533468 CAG38499 Q9UBQ0 EC 3.1.3.3
AL832866 CAI46196 Q5JPE4  
AM392835 CAL37713    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS29 NP_476528 M.musculus Vps29 56433 Gene Info NP_062754 100
R.norvegicus Vps29 288666   NP_001099402 99
A.gambiae AgaP_AGAP002338 1273629   XP_312630 87
D.melanogaster CG4764 33295   NP_608575 84
A.thaliana MAG1 823935   NP_190365 66
C.elegans vps-29 176424   NP_001022988 59
N.crassa NCU01822 3872066   XP_955919 51
S.cerevisiae VPS29 856403   NP_011876 50
S.pombe vps29 2542802   NP_594307 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)