Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LIMS1, LIM and senescent cell antigen-like domains 1
Sequence ID:NM_001193482
NM_001193483
NM_001193484
NM_001193485
NM_001193488
NM_004987
Entrez Gene ID:3987
Ensembl ID:ENSG00000169756

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 109271267 - 109300898

 Exon Info From UCSC:
NM_001193482
NM_001193483
NM_001193484
NM_001193485
NM_001193488
NM_004987

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3838632Full LengthBC005341LIM and senescent cell antigen-like domains 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004978  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001193482 NP_001180411    
NM_001193483 NP_001180412    
NM_001193484 NP_001180413    
NM_001193485 NP_001180414    
NM_001193488 NP_001180417    
NM_004987 NP_004978 P48059 LIM

Related Sequences

 
mRNAGenPeptSwissProt
U09284 AAA20086 P48059
BC005341 AAH05341 P48059
EU446859 ABZ92388  
AK314217 BAG36891 P48059
AK296992 BAH12469 P48059
AK302411 BAH13699 P48059
AK304260 BAH14143 P48059

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIMS1 NP_001180413 R.norvegicus Lims1 499443   NP_001138928 99
M.musculus Lims1 110829 Gene Info NP_080424 99
D.melanogaster stck 40999   NP_731241 66
A.gambiae AgaP_AGAP003429 1272802   XP_311715 66
C.elegans unc-97 180827   NP_508943 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)