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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VARS2, valyl-tRNA synthetase 2, mitochondrial
Sequence ID:NM_001167733
NM_001167734
NM_020442
Entrez Gene ID:57176
Ensembl ID:ENSG00000137411

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 30882102 - 30894235

 Exon Info From UCSC:
NM_001167733
NM_001167734
NM_020442

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8322657Full LengthBC113605valyl-tRNA synthetase 2, mitochondrial (putative)
8327522Full LengthBC112054valyl-tRNA synthetase 2, mitochondrial (putative)
9052045Full LengthBC143536valyl-tRNA synthetase 2, mitochondrial (putative)
4298611IncompleteBC009355valyl-tRNA synthetase 2, mitochondrial (putative)
4299851IncompleteBC008844valyl-tRNA synthetase 2, mitochondrial (putative)
4938443IncompleteBC073838valyl-tRNA synthetase 2, mitochondrial (putative)
5241568IncompleteBC063427valyl-tRNA synthetase like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065175  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001167733 NP_001161205      
NM_001167734 NP_001161206      
NM_020442 NP_065175 Q5ST30 EC 6.1.1.9 tRNA-synt_1
Anticodon_1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC008844 AAH08844 Q5ST30 EC 6.1.1.9
BC009355 AAH09355 Q5ST30 EC 6.1.1.9
BC073838 AAH73838 Q5ST30 EC 6.1.1.9
BC112054 AAI12055 Q5ST30 EC 6.1.1.9
BC113605 AAI13606 Q5ST30 EC 6.1.1.9
BC143536 AAI43537 B7ZL25  
AK025618 BAB15191 Q5ST30 EC 6.1.1.9
AK026063 BAB15344 Q9H6B7  
AB067472 BAB67778 Q5ST30 EC 6.1.1.9
AK315733 BAG38088 B2RDZ1  
AK293780 BAG57195 B4DET4  
AK294451 BAG57688 B4DG77  
AK303415 BAG64468 B4E0K6  
AK304807 BAG65557 B4E3P5  
AL122037 CAB59177 Q5ST30 EC 6.1.1.9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VARS2 NP_001161206 M.musculus Vars2 68915 Gene Info NP_780346 84
R.norvegicus Vars2 309596   NP_998728 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)