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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HPGD, hydroxyprostaglandin dehydrogenase 15-(NAD)
Sequence ID:NM_000860
NM_001145816
NM_001256301
NM_001256305
NM_001256306
NM_001256307
RefSeqGene ID:NG_011689
Entrez Gene ID:3248
Ensembl ID:ENSG00000164120

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q34-q35Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 175411382 - 175443638

 Exon Info From UCSC:
NM_000860
NM_001145816

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3638799Full LengthBC018986hydroxyprostaglandin dehydrogenase 15-(NAD)
3955175IncompleteBC007691hydroxyprostaglandin dehydrogenase 15-(NAD)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000851  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000860 NP_000851 P15428 EC 1.1.1.141 adh_short
NM_001145816 NP_001139288      
NM_001256301 NP_001243230      
NM_001256305 NP_001243234      
NM_001256306 NP_001243235      
NM_001256307 NP_001243236      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
J05594 AAA89174 P15428 EC 1.1.1.141
L76465 AAA89175 P15428 EC 1.1.1.141
U63296 AAB53034 O00749  
BC018986 AAH18986 P15428 EC 1.1.1.141
AK314624 BAG37190 P15428 EC 1.1.1.141
AK300125 BAG61916 B4DTA4  
AK300524 BAG62236 B4DU74  
AK300940 BAG62569 P15428 EC 1.1.1.141
AK296642 BAH12408 B4DU74  
X82460 CAA57843 Q12998  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HPGD NP_000851 M.musculus Hpgd 15446 Gene Info NP_032304 90
R.norvegicus Hpgd 79242   NP_077366 89
A.gambiae AgaP_AGAP001753 1281421   XP_321329 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)