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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATP6V0B, ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
Sequence ID:NM_001039457
NM_004047
Entrez Gene ID:533
Ensembl ID:ENSG00000117410

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p32.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 44440648 - 44443967

 Exon Info From UCSC:
NM_001039457
NM_004047

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2964510Full LengthBC000423ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
2964510Full LengthBC005876ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004038  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039457 NP_001034546    
NM_004047 NP_004038 Q99437 ATP-synt_C

Related Sequences

 
mRNAGenPeptSwissProt
L05089 AAC15853 Q16467
BC000423 AAH00423 Q99437
BC005876 AAH05876 Q99437
BT007151 AAP35815 Q99437
D89052 BAA13753 Q99437
CR456972 CAG33253 Q99437

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP6V0B NP_004038 R.norvegicus Atp6v0b 298451   NP_001100151 98
M.musculus Atp6v0b 114143 Gene Info NP_291095 96
A.gambiae AgaP_AGAP009334 1271245   XP_310004 66
C.elegans vha-4 174272   NP_495659 65
D.melanogaster VhaPPA1-1 45247   NP_652010 65
N.crassa NCU09747 3880589   XP_964449 61
A.thaliana AT2G25610 817101   NP_180132 57
A.thaliana AT4G32530 829388   NP_001119099 57
S.cerevisiae VMA16 856421   NP_011891 57
S.pombe vma16 2541999   NP_594516 56
P.falciparum MAL13P1.271 813833   XP_001350256 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)