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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SERPINH1, serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)
Sequence ID:NM_001207014
NM_001235
RefSeqGene ID:NG_012052
Entrez Gene ID:871
Ensembl ID:ENSG00000149257

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.5Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 75277394 - 75283128

Transcript StartTranscript EndChromosomal Start Chromosomal End
11957527316975273363
1968517527736075278015
8529507527977575279873
95111837527998375280215
118422027528282575283843

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3030138Full LengthBC014623serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)
4748644Full LengthBC036298serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)
5274406Full LengthBC070087serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001226  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001207014 NP_001193943    
NM_001235 NP_001226 P50454 Serpin

Related Sequences

 
mRNAGenPeptSwissProt
BC014623 AAH14623 P50454
BC036298 AAH36298 P50454
BC070087 AAH70087 P50454
BT007094 AAP35758 P50454
AY264853 AAP93914 P50454
AY744367 AAU95378 P50454
D83174 BAA11829 P50454
AB044778 BAA96788 P50454
AB044779 BAA96789 P50454
AK290124 BAF82813 A8K259
AK122936 BAG53805 P50454
AK297811 BAG60149 B4DN87
X61598 CAA43795 P50454

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SERPINH1 NP_001193943 M.musculus Serpinh1 12406 Gene Info NP_033955 95
R.norvegicus Serpinh1 29345   NP_058869 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)