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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPOCK1, sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
Sequence ID:NM_004598
Entrez Gene ID:6695
Ensembl ID:ENSG00000152377

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 136314187 - 136834983

 Exon Info From UCSC:
NM_004598

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4821322Full LengthBC030691sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004589  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004598 NP_004589 Q08629 Thyroglobulin_1
Kazal_2

Related Sequences

 
mRNAGenPeptSwissProt
AF231124 AAF43687 Q08629
BC030691 AAH30691 Q08629
DQ890914 ABM81840  
DQ894065 ABM84991  
AB209701 BAD92938 Q08629
AK094489 BAG52875 Q08629

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPOCK1 NP_004589 M.musculus Spock1 20745 Gene Info NP_033288 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)