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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPATA13, spermatogenesis associated 13
Sequence ID:NM_001166271
NM_153023
Entrez Gene ID:221178
Ensembl ID:ENSG00000182957

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q12.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 24879163 - 24881200

 Exon Info From UCSC:
NM_001166271
NM_153023

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40034357Full LengthBC109290spermatogenesis associated 13
40034359Full LengthBC109291spermatogenesis associated 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_694568  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001166271 NP_001159743    
NM_153023 NP_694568 Q96N96 SH3_1
PH
RhoGEF

Related Sequences

 
mRNAGenPeptSwissProt
BC109290 AAI09291 Q96N96
BC109291 AAI09292 Q96N96
AK055770 BAB71009 Q96N96
AK074117 BAB84943 Q96N96
AK097217 BAC04977 Q96N96
AK160371 BAD18714 Q96N96
AK123031 BAG53856 Q96N96
AK297394 BAG59834 B4DMC2
AK298717 BAG60873 Q96N96
AK299981 BAG61802 Q96N96
AK301149 BAG62740 Q96N96
BK006072 DAA05848 Q96N96

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPATA13 NP_001159743 M.musculus Spata13 219140 Gene Info NP_001028444 74
R.norvegicus Spata13 305938   XP_224253 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)