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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. HSPD1, heat shock 60kDa protein 1 (chaperonin)
Sequence ID:NM_002156
NM_199440
RefSeqGene ID:NG_008915
Entrez Gene ID:3329
Ensembl ID:ENSG00000144381

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
LEUKODYSTROPHY, HYPOMYELINATING, 4 
SPASTIC PARAPLEGIA 13, AUTOSOMAL DOMINANT 

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q33.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 198351769 - 198364573

 Exon Info From UCSC:
NM_002156
NM_199440

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821157Full LengthBC003030heat shock 60kDa protein 1 (chaperonin)
3609039Full LengthBC002676heat shock 60kDa protein 1 (chaperonin)
4025725Full LengthBC067082heat shock 60kDa protein 1 (chaperonin)
6372068Full LengthBC073746heat shock 60kDa protein 1 (chaperonin)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002156 NP_002147 P10809 Cpn60_TCP1
NM_199440 NP_955472 P10809 Cpn60_TCP1

Related Sequences

 
mRNAGenPeptSwissProt
M34664 AAA36022 P10809
M22382 AAA60127 P10809
BC002676 AAH02676 P10809
BC003030 AAH03030 P10809
BC067082 AAH67082 P10809
BC073746 AAH73746 P10809
DQ893414 ABM84340  
DQ896771 ABM87770  
EU719626 ACE06961 B3GQS7
AK312240 BAG35173 P10809
AK297305 BAH12542 B7Z4F6
AK298368 BAH12768 B7Z532
AK298632 BAH12833 B7Z597
AK298844 BAH12883 B7Z5E7
AK301276 BAH13448 B7Z712

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HSPD1 NP_002147 M.musculus Hspd1 15510 Gene Info NP_034607 98
R.norvegicus Hspd1 63868   NP_071565 98
D.melanogaster Hsp60 32045   NP_511115 75
A.gambiae AgaP_AGAP004002 1278824   XP_318461 74
C.elegans hsp-60 175316   NP_497429 72
A.thaliana HSP60-2 817883   NP_850203 61
N.crassa NCU01589 3872647   XP_956500 58
S.cerevisiae HSP60 850963   NP_013360 57
S.pombe mcp60 2543131   NP_592894 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)