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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HSD17B11, Hydroxysteroid (17-beta) dehydrogenase 11
Sequence ID:NM_016245
Entrez Gene ID:51170
Ensembl ID:ENSG00000198189

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 88257762 - 88312333

NM_016245 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
208478825769088258517
8489648826164188261757
96511028827843088278567
110312098829386088293966
121013418829585088295981
134214498830340688303513
145018928831201288312454

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3827935Full LengthBC021673hydroxysteroid (17-beta) dehydrogenase 11
3854750Full LengthBC008650hydroxysteroid (17-beta) dehydrogenase 11
3961721Full LengthBC014327hydroxysteroid (17-beta) dehydrogenase 11
4133318Full LengthBC016367hydroxysteroid (17-beta) dehydrogenase 11
4715042Full LengthBC036001hydroxysteroid (17-beta) dehydrogenase 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057329  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_016245 NP_057329 Q8NBQ5 EC 1.1.1.62 adh_short

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF126780 AAF06939 Q8NBQ5 EC 1.1.1.62
BC008650 AAH08650 Q8NBQ5 EC 1.1.1.62
BC014327 AAH14327 Q8NBQ5 EC 1.1.1.62
BC016367 AAH16367 Q8NBQ5 EC 1.1.1.62
BC021673 AAH21673 Q8NBQ5 EC 1.1.1.62
BC036001 AAH36001 Q8NBQ5 EC 1.1.1.62
AF273056 AAM44459 Q8NBQ5 EC 1.1.1.62
AY358553 AAQ88917 Q8NBQ5 EC 1.1.1.62
AK075348 BAC11560 Q8NBQ5 EC 1.1.1.62

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HSD17B11 NP_057329 M.musculus Hsd17b11 114664 Gene Info NP_444492 83
R.norvegicus Hsd17b11 289456   NP_001004209 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)