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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYNRG, Synergin, gamma
Sequence ID:NM_007247
NM_198882
NM_001163544
NM_001163545
NM_080550
NM_001163546
NM_001163547
Entrez Gene ID:11276
Ensembl ID:ENSG00000006114

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35879008 - 35969446

 Exon Info From UCSC:
NM_007247
NM_198882
NM_001163544
NM_001163545
NM_080550
NM_001163546
NM_001163547

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3077104Full LengthBC090930AP1 gamma subunit binding protein 1
9051984Full LengthBC143476AP1 gamma subunit binding protein 1
9051986Full LengthBC143478AP1 gamma subunit binding protein 1
40125864Full LengthBC117313AP1 gamma subunit binding protein 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163544 NP_001157016    
NM_001163545 NP_001157017    
NM_001163546 NP_001157018    
NM_001163547 NP_001157019    
NM_007247 NP_009178 Q9UMZ2  
NM_080550 NP_542117    
NM_198882 NP_942583    

Related Sequences

 
mRNAGenPeptSwissProt
AF169548 AAD49732 Q9UMZ2
BC090930 AAH90930 Q9UMZ2
BC117313 AAI17314 Q9UMZ2
BC143476 AAI43477 Q9UMZ2
BC143478 AAI43479 Q9UMZ2
AK302821 BAG64019 A8MYE0

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)