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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TFAM, Transcription factor A, mitochondrial
Sequence ID:NM_003201
NM_001270782
Entrez Gene ID:7019
Ensembl ID:ENSG00000108064

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 60145307 - 60154834

Transcript StartTranscript EndChromosomal Start Chromosomal End
12336014517560145407
2343526014597960146097
3534236014794960148019
4245736014842960148578
5746696015052460150619
6707266015411760154173
72719356015468760155895

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8992082Full LengthBC126366transcription factor A, mitochondrial
4552415IncompleteBC018628transcription factor A, mitochondrial
6717438IncompleteBC104482transcription factor A, mitochondrial

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003192  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270782 NP_001257711    
NM_003201 NP_003192 Q00059 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
M62810 AAA59849 Q00059
BC018628 AAH18628 Q05D31
BC104482 AAI04483 Q3SX57
BC126366 AAI26367 Q00059
BT019658 AAV38464 Q00059
BT019659 AAV38465 Q00059
EU279428 ABX72056 Q00059
HQ258758 ADR83509  
AK312558 BAG35455 Q00059
AB451241 BAG70055 Q00059
AB451366 BAG70180 Q00059
CR407653 CAG28581 Q6LES8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TFAM NP_003192 M.musculus Tfam 21780 Gene Info NP_033386 64
R.norvegicus Tfam 83474   NP_112616 64
D.melanogaster TFAM 42433   NP_524415 36
A.gambiae AgaP_AGAP008499 1277472   XP_316944 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)