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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ANKHD1, Ankyrin repeat and KH domain containing 1
Sequence ID:NM_020690
NM_017747
NM_024668
NM_017978
NM_001197030
NM_003732
Entrez Gene ID:54882
Ensembl ID:ENSG00000131503

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 139927250 - 139929160

 Exon Info From UCSC:
NM_020690
NM_017747
NM_024668
NM_017978
NM_003732

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069109Full LengthBC172415ankyrin repeat and KH domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065741  NP_060448  NP_003723  NP_060217  NP_078944  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001197030 NP_001183959    
NM_003732 NP_003723 O60516 eIF_4EBP
NM_017747 NP_060217 Q8IWZ3 KH_1
Ank
NM_017978 NP_060448   Ank
NM_020690 NP_065741   KH_1
Ank
NM_024668 NP_078944   Ank

Related Sequences

 
mRNAGenPeptSwissProt
AF038869 AAC39761 O60516
AF258557 AAG23760 Q8IWZ3
AF217646 AAG41779 Q8IWZ3
BC004457 AAH04457 Q8IWZ3
BC009420 AAH09420 Q8IWZ3
BC009909 AAH09909 Q8IWZ3
BC010881 AAH10881 O60516
BC040231 AAH40231 Q8IWG5
BC069293 AAH69293 O60516
BC073751 AAH73751 O60516
BC117677 AAI17678 Q8IWZ3
BC117678 AAI17679 Q8IWZ3
BC127127 AAI27128 Q8IWZ3
BC150486 AAI50487 Q8IWZ3
BC172415 AAI72415  
BC172416 AAI72416  
AY070436 AAL65263 Q7Z586
AF521882 AAO14943 Q8IWZ3
AF521883 AAO14944 Q8IWZ3
JF432842 ADZ16059  
AB029008 BAA83037 Q8IWZ3
AK000295 BAA91063 Q9NXF0
AK000904 BAA91417 Q8IWZ3
AK022041 BAB13958 Q8IWZ3
AK024189 BAB14849 Q9H7X4
AK074173 BAB84999 Q8TEF1
AL136943 CAB66877 Q9H059

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ANKHD1 NP_060217 D.melanogaster mask 50070   NP_788733 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)