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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C2orf29, chromosome 2 open reading frame 29
Sequence ID:NM_017546
Entrez Gene ID:55571
Ensembl ID:ENSG00000158435

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 101869360 - 101886003

NM_017546 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1596101869344101869939
597761101874252101874416
762914101879000101879152
9151117101881306101881508
11181320101883138101883340
13211417101885501101885597
14182517101885677101886776

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5752134Full LengthBC064421chromosome 2 open reading frame 29
2959635IncompleteBC018664chromosome 2 open reading frame 29

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017546 NP_060016 Q9UKZ1  

Related Sequences

 
mRNAGenPeptSwissProt
AF103798 AAF02418 Q9UKZ1
BC018664 AAH18664 Q9UKZ1
BC064421 AAH64421 Q9UKZ1
AK024221 BAG51272 B3KNB0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C2orf29 NP_060016 R.norvegicus RGD1560909 363221   NP_001102264 97
M.musculus D1Bwg0212e 52846 Gene Info NP_082319 96
D.melanogaster CG13567 37839   NP_611874 62
A.thaliana AT5G18420 831960   NP_197343 44
A.gambiae AgaP_AGAP007117 3290307   XP_565083 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)