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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STX7, syntaxin 7
Sequence ID:NM_003569
Entrez Gene ID:8417
Ensembl ID:ENSG00000079950

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q23.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 132779063 - 132780834

NM_003569 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13327132778662132781988
33283410132785131132785213
34113483132789541132789613
34843580132791089132791185
35813633132791712132791764
36343771132792601132792738
37723865132793420132793513
38663935132796731132796800
39364078132824584132824726
40794270132834145132834336

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3860059Full LengthBC011975syntaxin 7

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003569 NP_003560 O15400  

Related Sequences

 
mRNAGenPeptSwissProt
U77942 AAC51851 O15400
BC011975 AAH11975 O15400
AK294911 BAG57998 B4DH37
AK301464 BAG62984 B4DWC2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STX7 NP_003560 M.musculus Stx7 53331 Gene Info NP_058077 95
R.norvegicus Stx7 60466   NP_068641 93
A.gambiae AgaP_AGAP005543 1276226   XP_315543 45
D.melanogaster Syx7 36173   NP_730632 44
A.thaliana SYP23 827494   NP_001078403 33
A.thaliana VAM3 834730   NP_568671 32
N.crassa NCU06777 3879828   XP_963618 30
S.pombe pep12 2540289   NP_595100 29
S.cerevisiae PEP12 854201   NP_014679 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)