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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMD12, Proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
Sequence ID:NM_002816
NM_174871
Entrez Gene ID:5718
Ensembl ID:ENSG00000197170

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q24.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 65334032 - 65362678

 Exon Info From UCSC:
NM_002816
NM_174871

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4111477Full LengthBC019062proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
30386487Full LengthBC065826proteasome (prosome, macropain) 26S subunit, non-ATPase, 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002807  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002816 NP_002807 O00232 PCI
NM_174871 NP_777360    

Related Sequences

 
mRNAGenPeptSwissProt
BC019062 AAH19062 O00232
BC065826 AAH65826 O00232
DQ892821 ABM83747  
DQ896067 ABM87066  
AB003103 BAA19749 O00232
AK222679 BAD96399 O00232
AK091198 BAG52303 O00232

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMD12 NP_002807 M.musculus Psmd12 66997 Gene Info NP_080170 98
R.norvegicus Psmd12 287772   NP_001005875 98
A.gambiae AgaP_AGAP005535 1276217   XP_556176 57
D.melanogaster Rpn5 40717   NP_649588 53
N.crassa NCU02650 3881589   XP_965423 49
A.thaliana RPN5B 836597   NP_001032142 48
A.thaliana EMB2107 830850   NP_974758 47
C.elegans rpn-5 173807   NP_494835 47
S.pombe rpn502 2543347   NP_594776 45
S.pombe rpn501 2542907   NP_593278 45
S.cerevisiae RPN5 851408   NP_010134 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)