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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNOT6L, CCR4-NOT transcription complex, subunit 6-like
Sequence ID:NM_144571
Entrez Gene ID:246175
Ensembl ID:ENSG00000138767

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 78639175 - 78650030

 Exon Info From UCSC:
NM_144571

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016034BC152816CCR4-NOT transcription complex, subunit 6-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_653172  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_144571 NP_653172 Q96LI5 LRR_1
Exo_endo_phos

Related Sequences

 
mRNAGenPeptSwissProt
BC152816 AAI52817 Q96LI5
AK058188 BAB71707 Q96LI5
AK303417 BAG64470 B4E0K8
AK304397 BAG65232 B4E2S0
AL133112 CAB61415 Q96LI5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNOT6L NP_653172 M.musculus Cnot6l 231464 Gene Info NP_849185 98
R.norvegicus Cnot6l 360917   NP_001101825 98
S.pombe ccr4 2538913   NP_587901 46
N.crassa NCU07779 3874847   XP_958700 40
S.cerevisiae CCR4 851212   NP_009381 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)