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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OPN1LW, opsin 1 (cone pigments), long-wave-sensitive
Sequence ID:NM_020061
RefSeqGene ID:NG_009105
Entrez Gene ID:5956
Ensembl ID:ENSG00000102076

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BLUE CONE MONOCHROMACYOPN1MW
COLORBLINDNESS, PROTAN 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 153409739 - 153424501

NM_020061 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1145153409724153409868
146442153416127153416423
443611153418412153418580
612777153420048153420213
7781017153421768153422007
10181232153424290153424504

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062150Full LengthBC156643opsin 1 (cone pigments), long-wave-sensitive

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064445  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020061 NP_064445 P04000 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC156643 AAI56644  
CR749814 CAH18674 Q68CR4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OPN1LW NP_064445 R.norvegicus Opn1mw 89810   NP_446000 89
M.musculus Opn1mw 14539 Gene Info NP_032132 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)