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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. H2AFB1, H2A histone family, member B1
Sequence ID:NM_001017990
RefSeqGene ID:NG_011403
Entrez Gene ID:474382
Ensembl ID:ENSG00000198082

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 154113324 - 154113672

NM_001017990 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1515154113316154113830

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40021540Full LengthBC128034H2A histone family, member B1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001017990  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001017990 NP_001017990 P0C5Y9 Histone

Related Sequences

 
mRNAGenPeptSwissProt
BC128034 AAI28035 P0C5Y9
CR542230 CAG47026 P0C5Y9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens H2AFB1 NP_001017990 H.sapiens H2AFB2 474381 Gene Info NP_001017991 99
H.sapiens H2AFB3 83740 Gene Info NP_542451 99
M.musculus H2afb3-ps 624957   XP_894594 56
M.musculus Gm14920 100039319 Gene Info NP_001096135 55
M.musculus H2afb2-ps 624153   XP_893765 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)