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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CD40LG, CD40 ligand
Sequence ID:NM_000074
RefSeqGene ID:NG_007280
Entrez Gene ID:959
Ensembl ID:ENSG00000102245

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
IMMUNODEFICIENCY, X-LINKED, WITH HYPER-IGM 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq26Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 135730407 - 135741574

NM_000074 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1228135730335135730562
229360135732424135732555
361418135736531135736588
419481135738514135738576
4821832135741197135742547

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30418744Full LengthBC071754CD40 ligand
30915276Full LengthBC074950CD40 ligand

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000065  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000074 NP_000065 P29965 TNF

Related Sequences

 
mRNAGenPeptSwissProt
L07414 AAA35662 P29965
BC071754 AAH71754 P29965
BC074950 AAH74950 P29965
AY197739 AAP37943 Q3L8U2
AF529195 AAQ09090 Q3LFI8
HQ447532 ADQ32018  
AK292637 BAF85326  
X67878 CAA48077 P29965
X68550 CAA48554 P29965
Z15017 CAA78737 P29965
FN298241 CAX65629 C1L3E0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CD40LG NP_000065 M.musculus Cd40lg 21947 Gene Info NP_035746 78
R.norvegicus Cd40lg 84349   NP_445805 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta