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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VPS41, vacuolar protein sorting 41 homolog (S. cerevisiae)
Sequence ID:NM_014396
NM_080631
Entrez Gene ID:27072
Ensembl ID:ENSG00000006715

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p14-p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 38765159 - 38791831

 Exon Info From UCSC:
NM_014396
NM_080631

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4822048Full LengthBC044851vacuolar protein sorting 41 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055211  NP_542198  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014396 NP_055211 P49754 Clathrin
NM_080631 NP_542198 Q9H348 Clathrin

Related Sequences

 
mRNAGenPeptSwissProt
U87309 AAB47563 P49754
U87281 AAB47758 P49754
L40398 AAC42004 P49754
BC044851 AAH44851 P49754
HQ257912 ADR82667  
AK314556 BAG37141 B2RB94
AK299143 BAG61195 B4DR83

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS41 NP_055211 M.musculus Vps41 218035 Gene Info NP_742118 97
R.norvegicus Vps41 306991   NP_001100825 97
A.gambiae AgaP_AGAP009174 1280131   XP_319939 41
A.thaliana VPS41 837340   NP_172297 40
D.melanogaster lt 3355130   NP_001036416 39
N.crassa NCU05902 3875607   XP_959460 36
S.pombe vps41 2542058   NP_593409 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)