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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RABEP1, rabaptin, RAB GTPase binding effector protein 1
Sequence ID:NM_001083585
NM_004703
Entrez Gene ID:9135
Ensembl ID:ENSG00000029725

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 5185781 - 5286518

 Exon Info From UCSC:
NM_001083585
NM_004703

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6046320Full LengthBC041700rabaptin, RAB GTPase binding effector protein 1
4470315IncompleteBC032435rabaptin, RAB GTPase binding effector protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004694  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001083585 NP_001077054    
NM_004703 NP_004694 Q15276 Rabaptin

Related Sequences

 
mRNAGenPeptSwissProt
AF098638 AAC70781 Q15276
BC032435 AAH32435 Q05BX6
BC041700 AAH41700 Q15276
AK314183 BAG36864 Q15276
AK297535 BAG59936 B4DMM4
X91141 CAA62580 Q15276

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RABEP1 NP_004694 R.norvegicus Rabep1 54190   NP_061997 96
M.musculus Rabep1 54189 Gene Info NP_062273 96
A.gambiae AgaP_AGAP000407 1271838   XP_310692 31
C.elegans rabn-5 175823   NP_498266 31
D.melanogaster CG4030 37395   NP_611545 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)