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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PATL1, Protein associated with topoisomerase II homolog 1 (yeast)
Sequence ID:NM_152716
Entrez Gene ID:219988
Ensembl ID:ENSG00000166889

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 59404191 - 59410443

 Exon Info From UCSC:
NM_152716

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6156770Full LengthBC065264protein associated with topoisomerase II homolog 1 (yeast)
40028492Full LengthBC109038protein associated with topoisomerase II homolog 1 (yeast)
40028497Full LengthBC109039protein associated with topoisomerase II homolog 1 (yeast)
4423385IncompleteBC048309FLJ36874 protein
5502183IncompleteBC111047protein associated with topoisomerase II homolog 1 (yeast)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_152716 NP_689929 Q86TB9  

Related Sequences

 
mRNAGenPeptSwissProt
BC065264 AAH65264 Q86TB9
BC109038 AAI09039 Q86TB9
BC109039 AAI09040 Q86TB9
BC111047 AAI11048 Q86TB9
AB065087 BAB93524 Q86TB9
AK094193 BAC04305 Q86TB9
AK127649 BAG54542 B3KXN0
AK127943 BAG54601 Q86TB9
AK293213 BAH11469 B7Z1D3
AL831992 CAD89916 Q86TB9
AM392959 CAL37837  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PATL1 NP_689929 R.norvegicus Patl1 361736   NP_001101990 96
M.musculus Patl1 225929 Gene Info NP_766223 96
A.gambiae AgaP_AGAP009631 1279006   XP_318663 34
D.melanogaster Patr-1 42058   NP_650592 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)