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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BARX2, BARX homeobox 2
Sequence ID:NM_003658
Entrez Gene ID:8538
Ensembl ID:ENSG00000043039

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 129245834 - 129321641

NM_003658 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1237129245880129246116
238538129306645129306945
539623129312729129312813
6241766129321030129322172

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262194Full LengthBC069378BARX homeobox 2
40069348Full LengthBC111432BARX homeobox 2
40069358Full LengthBC111572BARX homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003649  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003658 NP_003649 Q9UMQ3 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF031924 AAC04705 Q9UMQ3
BC069378 AAH69378 Q9UMQ3
BC111432 AAI11433 Q9UMQ3
BC111572 AAI11573 Q9UMQ3
AJ243512 CAB50736 Q9UMQ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BARX2 NP_003649 M.musculus Barx2 12023 Gene Info NP_038828 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)