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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLVS1, clavesin 1
Sequence ID:NM_173519
Entrez Gene ID:157807
Ensembl ID:ENSG00000177182

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 62200530 - 62412412

NM_173519 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11736220052462200696
1747796221223562212840
7809546228916362289337
95510656236669962366809
106613016237086562371100
130234906241201362414201

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5192332Full LengthBC042617retinaldehyde binding protein 1-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775790  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173519 NP_775790 Q8IUQ0 CRAL_TRIO
CRAL_TRIO_N

Related Sequences

 
mRNAGenPeptSwissProt
BC042617 AAH42617 Q8IUQ0
AY094971 AAM15733 Q8IUQ0
AF445194 AAP97323 Q8IUQ0
HQ448548 ADQ33027  
AK313040 BAG35872 Q8IUQ0
BK006899 DAA06536 Q8IUQ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLVS1 NP_775790 M.musculus Clvs1 74438 Gene Info NP_083216 97
R.norvegicus Clvs1 366311   NP_001102439 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)