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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDH17, cadherin 17, LI cadherin (liver-intestine)
Sequence ID:NM_001144663
NM_004063
Entrez Gene ID:1015
Ensembl ID:ENSG00000079112

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 95139398 - 95143114

 Exon Info From UCSC:
NM_001144663
NM_004063

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8322516Full LengthBC113464cadherin 17, LI cadherin (liver-intestine)
8327481Full LengthBC112013cadherin 17, LI cadherin (liver-intestine)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004054  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001144663 NP_001138135    
NM_004063 NP_004054 Q12864 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
U07969 AAA19021 Q12864
BC112013 AAI12014 Q12864
BC113464 AAI13465 Q12864
HQ258682 ADR83433  
AK312873 BAG35725 B2R778
AK300638 BAG62327 B4DUG5
AK301001 BAG62620 B4DVA8
X83228 CAA58231 Q12864

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDH17 NP_001138135 R.norvegicus Cdh17 117048   NP_446429 79
M.musculus Cdh17 12557 Gene Info NP_062727 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)