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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BTF3, basic transcription factor 3
Sequence ID:NM_001037637
NM_001207
Entrez Gene ID:689
Ensembl ID:ENSG00000145741

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 72794276 - 72801320

 Exon Info From UCSC:
NM_001037637
NM_001207

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2966788Full LengthBC008062basic transcription factor 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001198  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001037637 NP_001032726 P20290  
NM_001207 NP_001198   NAC

Related Sequences

 
mRNAGenPeptSwissProt
BC008062 AAH08062 P20290
BT007120 AAP35784 P20290
DQ892976 ABM83902  
DQ896224 ABM87223  
AB062126 BAB93458 P20290
AK291125 BAF83814 P20290
X53280 CAA37375 P20290
X74070 CAA52200 P20290

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BTF3 NP_001032726 R.norvegicus Btf3 294680   NP_001008310 100
M.musculus Btf3 218490 Gene Info NP_663430 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)