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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NCBP2, Nuclear cap binding protein subunit 2, 20kDa
Sequence ID:NM_007362
NM_001042540
Entrez Gene ID:22916
Ensembl ID:ENSG00000114503

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q29Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 196662276 - 196669248

 Exon Info From UCSC:
NM_007362
NM_001042540

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3458927Full LengthBC001255nuclear cap binding protein subunit 2, 20kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031388  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042540 NP_001036005    
NM_007362 NP_031388 P52298 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC001255 AAH01255 P52298
BT006842 AAP35488 P52298
AY644767 AAV85455 P52298
DQ890703 ABM81629  
DQ893887 ABM84813  
D59253 BAA09599 P52298
AK316601 BAG38188 P52298
AK093216 BAG52672 B3KSB0
AK296144 BAG58884 B4DJM2
AK297506 BAG59919 P52298
AK315903 BAH14274 P52298
X84157 CAA58962 P52298
BX537372 CAD97614 Q7Z3W9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NCBP2 NP_031388 M.musculus Ncbp2 68092 Gene Info NP_080830 98
R.norvegicus Pigz 689116   NP_001102995 98
A.thaliana CBP20 834443   NP_001078705 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)