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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHMP3, charged multivesicular body protein 3
Sequence ID:NM_001005753
NM_001193517
NM_016079
NR_036454
Entrez Gene ID:51652
Ensembl ID:ENSG00000115561

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 86730552 - 86790489

 Exon Info From UCSC:
NM_001005753
NM_001193517
NM_016079

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3660116Full LengthBC004419vacuolar protein sorting 24 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001005753  NP_057163  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001005753 NP_001005753   ESCRT-III
NM_001193517 NP_001180446    
NM_001198954 NP_001185883    
NM_016079 NP_057163 Q9Y3E7 ESCRT-III

Related Sequences

 
mRNAGenPeptSwissProt
AF151907 AAD34144 Q9Y3E7
AF219226 AAF26737 Q9Y3E7
BC004419 AAH04419 Q9Y3E7
AY364249 AAQ76808 Q9Y3E7
EU446807 ABZ92336  
AK290725 BAF83414 Q9Y3E7
AK315835 BAF98726 Q9Y3E7
AK312353 BAG35273 Q9Y3E7
AK294389 BAG57645 Q9Y3E7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHMP3 NP_057163 M.musculus Chmp3 66700 Gene Info NP_080059 97
R.norvegicus Chmp3 282834   NP_758834 97
A.gambiae AgaP_AGAP003507 1270924   XP_309652 62
D.melanogaster vps24 40542   NP_649451 62
C.elegans T27F7.1 173863   NP_494919 59
A.thaliana VPS24.1 832359   NP_197686 42
A.thaliana VPS24.2 823635   NP_190086 42
N.crassa NCU01791 3872618   XP_956469 40
S.pombe vps24 2542234   NP_594587 34
S.cerevisiae VPS24 853825   NP_012883 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)