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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LRRTM1, leucine rich repeat transmembrane neuronal 1
Sequence ID:NM_178839
Entrez Gene ID:347730
Ensembl ID:ENSG00000162951

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 80529002 - 80531874

NM_178839 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
620068052900280531002
200722178053127680531486

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5200499Full LengthBC045113leucine rich repeat transmembrane neuronal 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_849161  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178839 NP_849161 Q86UE6 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
BC045113 AAH45113 Q86UE6
AY182024 AAO67545 Q86UE6
AY358310 AAQ88677 Q86UE6
HQ257885 ADR82640  
AK056644 BAB71240 Q86UE6
AK290512 BAF83201 Q86UE6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LRRTM1 NP_849161 M.musculus Lrrtm1 74342 Gene Info NP_083156 97
R.norvegicus LRRTM1 679668   NP_001102844 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)