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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CLCNKA, chloride channel, voltage-sensitive Ka
Sequence ID:XM_003960902
NM_001042704
NM_001257139
NM_004070
RefSeqGene ID:NG_009359
Entrez Gene ID:1187
Ensembl ID:ENSG00000186510

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BARTTER SYNDROME, TYPE 4B, DIGENICCLCNKB

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 16348530 - 16360392

 Exon Info From UCSC:
NM_001042704
NM_004070

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5184165Full LengthBC048282chloride channel Ka
5187202Full LengthBC053869chloride channel Ka
5172279IncompleteBC035373chloride channel Ka

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004061  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042704 NP_001036169    
NM_001257139 NP_001244068    
NM_004070 NP_004061 P51800 CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
BC048282 AAH48282 P51800
BC053869 AAH53869 P51800
AK290814 BAF83503 A8K449
AK293476 BAG56967 B4DE56
AK298285 BAG60545 B4DPD3
AK293586 BAH11540 B7Z1K4
Z30643 CAA83120 P51800
XM_003960902 XP_003960951  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLCNKA NP_001036169 M.musculus Clcnkb 56365 Gene Info NP_062675 81
R.norvegicus Clcnkb 79430   NP_775126 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)