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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM1A, lysine (K)-specific demethylase 1A
Sequence ID:NM_001009999
NM_015013
Entrez Gene ID:23028
Ensembl ID:ENSG00000004487

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 23345987 - 23410182

 Exon Info From UCSC:
NM_001009999
NM_015013

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4815528Full LengthBC040194amine oxidase (flavin containing) domain 2
5298150Full LengthBC048134amine oxidase (flavin containing) domain 2
3917412IncompleteBC016639amine oxidase (flavin containing) domain 2
5013430IncompleteBC025362amine oxidase (flavin containing) domain 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055828  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001009999 NP_001009999    
NM_015013 NP_055828 O60341 Amino_oxidase
SWIRM

Related Sequences

 
mRNAGenPeptSwissProt
BC016639 AAH16639 O60341
BC025362 AAH25362 O60341
BC040194 AAH40194 O60341
BC048134 AAH48134 O60341
AB011173 BAA25527 O60341
AK290328 BAF83017 A8K2R3
AL833812 CAD38675 O60341

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM1A NP_055828 M.musculus Kdm1a 99982 Gene Info NP_598633 98
R.norvegicus Kdm1a 500569   NP_001123570 98
A.gambiae AgaP_AGAP011661 1280978   XP_320852 63
D.melanogaster Su(var)3-3 40217   NP_730497 57
A.thaliana LDL1 842582   NP_176471 45
N.crassa NCU09120 3875040   XP_958892 37
C.elegans spr-5 173214   NP_493366 29
C.elegans lsd-1 181369   NP_510000 28
S.pombe lsd1 2539805   NP_595398 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)