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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMG7, smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Sequence ID:NM_001174061
NM_173156
NM_201568
NM_201569
NM_014837
RefSeqGene ID:NG_029808
Entrez Gene ID:9887
Ensembl ID:ENSG00000116698

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 183441692 - 183523321

 Exon Info From UCSC:
NM_001174061
NM_173156
NM_201568
NM_201569

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4829267Full LengthBC036381Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
4135126IncompleteBC009281Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
6337867IncompleteBC052565Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001174061 NP_001167532    
NM_173156 NP_775179 Q92540  
NM_201568 NP_963862    
NM_201569 NP_963863    

Related Sequences

 
mRNAGenPeptSwissProt
BC036381 AAH36381 Q92540
BC052565 AAH52565 Q92540
AY386363 AAR25620 Q6TV06
D87437 BAA13381 Q92540
AK056035 BAB71079 Q96N31
AK091477 BAC03672 Q8NB69
AB085674 BAC53621 Q92540
AK297207 BAG59692 B4DLY0
AK299178 BAG61224 B4DRB2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMG7 NP_963863 M.musculus Smg7 226517 Gene Info NP_001153728 96
R.norvegicus Smg7 360855   XP_341133 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)