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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IRF6, interferon regulatory factor 6
Sequence ID:NM_001206696
NM_006147
RefSeqGene ID:NG_007081
Entrez Gene ID:3664
Ensembl ID:ENSG00000117595

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
OROFACIAL CLEFT 6 
POPLITEAL PTERYGIUM SYNDROME 
VAN DER WOUDE SYNDROME 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q32.3-q41Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 209961261 - 209975381

Transcript StartTranscript EndChromosomal Start Chromosomal End
2729209961261209961988
730848209963011209963129
8491241209963839209964231
12421400209965613209965771
14011529209968634209968762
15301734209969692209969896
17351911209974584209974760
19121983209975316209975387
19842171209979291209979478

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3449699Full LengthBC014852interferon regulatory factor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006138  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001206696 NP_001193625    
NM_006147 NP_006138 O14896 IRF

Related Sequences

 
mRNAGenPeptSwissProt
AF027292 AAB84111 O14896
BC014852 AAH14852 O14896
AK312857 BAG35709 B2R762
AK296960 BAG59504 B4DLE2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IRF6 NP_006138 M.musculus Irf6 54139 Gene Info NP_058547 98
R.norvegicus Irf6 364081   NP_001102329 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)