Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCDC6, coiled-coil domain containing 6
Sequence ID:NM_005436
RefSeqGene ID:NG_027819
Entrez Gene ID:8030
Ensembl ID:ENSG00000108091

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
THYROID CARCINOMA, PAPILLARYGOLGA5
NCOA4
NCOA4
PCM1
PRKAR1A
TRIM24
TRIM33

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 61548520 - 61550530

NM_005436 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
243496154852161552868
435044746155423061554354
447545756156417761564277
457647326156667961566835
473348936157239261572552
489449976157440961574512
499851266159228261592410
512752766161231061612459
527762156166587961666817

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5549623Full LengthBC036757coiled-coil domain containing 6
5745698Full LengthBC064391coiled-coil domain containing 6
4762273IncompleteBC022284coiled-coil domain containing 6

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005436 NP_005427 Q16204  

Related Sequences

 
mRNAGenPeptSwissProt
S72869 AAC60637 Q16204
BC022284 AAH22284 Q05CP8
BC036757 AAH36757 Q16204
BC064391 AAH64391 Q16204
AK292593 BAF85282 Q16204

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCDC6 NP_005427 M.musculus Ccdc6 76551 Gene Info NP_001104591 97
R.norvegicus Ccdc6 691155   XP_001077030 97
A.gambiae AgaP_AGAP005883 1276550   XP_315910 64
D.melanogaster CG6664 39903   NP_730234 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)