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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TPD52L1, tumor protein D52-like 1
Sequence ID:NM_001003395
NM_001003396
NM_001003397
NM_003287
RefSeqGene ID:NG_029911
Entrez Gene ID:7164
Ensembl ID:ENSG00000111907

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 125524864 - 125584638

 Exon Info From UCSC:
NM_001003395
NM_001003396
NM_001003397
NM_003287

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822877Full LengthBC002375tumor protein D52-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001003395  NP_003278  NP_001003397  NP_001003396  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001003395 NP_001003395   TPD52
NM_001003396 NP_001003396   TPD52
NM_001003397 NP_001003397   TPD52
NM_003287 NP_003278 Q16890 TPD52

Related Sequences

 
mRNAGenPeptSwissProt
U44427 AAB40894 Q16890
U44428 AAB40895 Q16890
U44429 AAB40896 Q15730
AF004427 AAC98475 Q16890
AF208012 AAG49634 Q16890
BC002375 AAH02375 Q16890
AK291866 BAF84555 Q16890
AK291872 BAF84561 Q16890
AK291887 BAF84576 Q16890

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TPD52L1 NP_003278 R.norvegicus Tpd52l1 689256   NP_001037760 94
M.musculus Tpd52l1 21987 Gene Info NP_033439 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)