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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCAF8, SR-related CTD-associated factor 8
Sequence ID:NM_014892
Entrez Gene ID:22828
Ensembl ID:ENSG00000213079

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q25.1-q25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 155054849 - 155155192

 Exon Info From UCSC:
NM_014892

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4374384Full LengthBC070071RNA binding motif protein 16
5532382IncompleteBC032728RNA binding motif protein 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055707  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014892 NP_055707 Q9UPN6 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC032728 AAH32728 Q05BU5
BC070071 AAH70071 Q9UPN6
AB029039 BAA83068 Q9UPN6
AK023859 BAB14705 Q9H8B2
AK295651 BAH12140 B7Z3A4
AK302969 BAH13862 B7Z876
AK303001 BAH13874 B7Z888
AL833928 CAD38784 Q8NDE9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCAF8 NP_055707 R.norvegicus Rbm16 245926   NP_620794 92
M.musculus Scaf8 106583 Gene Info NP_598884 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)