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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTX3, pentraxin 3, long
Sequence ID:NM_002852
Entrez Gene ID:5806
Ensembl ID:ENSG00000163661

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 157154579 - 157160768

NM_002852 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1273157154579157154851
274675157155301157155702
6761937157160154157161415

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5768379Full LengthBC039733pentraxin-related gene, rapidly induced by IL-1 beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002843  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002852 NP_002843 P26022 Pentaxin

Related Sequences

 
mRNAGenPeptSwissProt
M31166 AAA61234 P26022
BC039733 AAH39733 P26022
AK312705 BAG35583 P26022
X63053 CAA44778 P26022
X63613 CAA45158 P26022

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTX3 NP_002843 M.musculus Ptx3 19288 Gene Info NP_033013 82
R.norvegicus Ptx3 689388   NP_001103006 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)