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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCDHB4, protocadherin beta 4
Sequence ID:NM_018938
RefSeqGene ID:NG_000017
Entrez Gene ID:56131
Ensembl ID:ENSG00000081818

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 140501580 - 140503968

NM_018938 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13621140501580140505200

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40008130Full LengthBC098346protocadherin beta 4
40008131Full LengthBC098139protocadherin beta 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061761  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018938 NP_061761 Q9Y5E5 Cadherin
Cadherin_2

Related Sequences

 
mRNAGenPeptSwissProt
AF152497 AAD43758 Q9Y5E5
BC098139 AAH98139 Q9Y5E5
BC098346 AAH98346 Q9Y5E5
AF217754 AAK51621 Q9Y5E5
AK313640 BAG36398 B2R951

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCDHB4 NP_061761 M.musculus Pcdhb5 93876 Gene Info NP_444360 80
R.norvegicus Pcdhb5 291654   NP_001108074 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)