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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LIMD2, LIM domain containing 2
Sequence ID:NM_030576
Entrez Gene ID:80774
Ensembl ID:ENSG00000136490

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 61773261 - 61777485

NM_030576 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
928306177324961776070
283129706177615861776297
297130126177638761776428
301331046177661661776707
310532326177739161777518

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3636469Full LengthBC004400LIM domain containing 2
5732102Full LengthBC051812LIM domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_085053  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030576 NP_085053 Q9BT23 LIM

Related Sequences

 
mRNAGenPeptSwissProt
BC004400 AAH04400 Q9BT23
BC051812 AAH51812 Q9BT23
AY037154 AAK67634 Q9BT23
AK092301 BAC03855 Q9BT23

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIMD2 NP_085053 M.musculus Limd2 67803 Gene Info NP_765985 96
R.norvegicus Limd2 360646   NP_001020886 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)