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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GBAS, Glioblastoma amplified sequence
Sequence ID:NM_001483
NM_001202469
Entrez Gene ID:2631
Ensembl ID:ENSG00000146729

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 56032295 - 56067871

Transcript StartTranscript EndChromosomal Start Chromosomal End
21005603229556032393
1012405604581856045957
2412865604604256046087
2873815604916556049259
3824525604990256049972
4535935605142056051560
5946255605253956052570
6267205606258656062680
7218045606505856065141
80519755606670056067870

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2959662Full LengthBC000732glioblastoma amplified sequence
2959662Full LengthBC001837glioblastoma amplified sequence
4808962Full LengthBC030821glioblastoma amplified sequence

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001474  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001202469 NP_001189398    
NM_001483 NP_001474 O75323 NIPSNAP

Related Sequences

 
mRNAGenPeptSwissProt
AF029786 AAC29002 O75323
BC000732 AAH00732 O75323
BC001837 AAH01837 O75323
BC030821 AAH30821 O75323
BT007112 AAP35776 O75323
DQ892309 ABM83235  
DQ895508 ABM86434  
AJ001259 CAA04633 O75323
CR407612 CAG28540 O75323
AM392838 CAL37716  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GBAS NP_001474 R.norvegicus Gbas 498174   NP_001017486 93
M.musculus Gbas 14467 Gene Info NP_032121 92
A.gambiae AgaP_AGAP003200 4577222   XP_312904 47
D.melanogaster Nipsnap 32573   NP_727932 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)