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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL9A1, collagen, type IX, alpha 1
Sequence ID:NM_001851
NM_078485
RefSeqGene ID:NG_011654
Entrez Gene ID:1297
Ensembl ID:ENSG00000112280

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
EPIPHYSEAL DYSPLASIA, MULTIPLE, 6 
STICKLER SYNDROME,TYPE IV 

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q12-q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 70926226 - 70956006

 Exon Info From UCSC:
NM_001851
NM_078485

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4914907Full LengthBC063646collagen, type IX, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_511040  NP_001842  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001851 NP_001842 P20849 Collagen
NM_078485 NP_511040   Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC015409 AAH15409 P20849
BC063646 AAH63646 P20849
AK125738 BAG54240 B3KWS8
X54412 CAA38276 P20849
X54413 CAA38277 P20849

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL9A1 NP_001842 M.musculus Col9a1 12839 Gene Info NP_031766 90
R.norvegicus Col9a1 305104   XP_223124 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)